Transcript: lnc-SMAD3-6:1

Basic information

LNCipedia transcript ID: lnc-SMAD3-6:1 
LNCipedia gene ID: lnc-SMAD3-6
Location (hg19): chr15:67641113-67650833
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 1945 bp
Exons: 5
Sources: Nielsen et al.,2014
Alternative transcript names: l_1177_NR_026979
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.0608 non-coding 
CPAT coding probability 55.83% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMAD3-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMAD3-6:1
4.0 lnc-SMAD3-6:1
4.1 lnc-SMAD3-6:1
5.0 lnc-SMAD3-6:1
5.1 lnc-MAP2K5-7:1
5.2 lnc-SMAD3-6:1