Transcript: lnc-SMAD4-2:2

Basic information

LNCipedia transcript ID: lnc-SMAD4-2:2 
LNCipedia gene ID: lnc-SMAD4-2
Location (hg19): chr18:48553198-48555035
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1107 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT059293
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.2117 non-coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMAD4-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ELAC1-2:1
4.0 lnc-ELAC1-2:1
4.1 lnc-ELAC1-2:1
5.0 lnc-ELAC1-2:1
5.1 lnc-CTIF-38:1
5.2 lnc-SMAD4-2:2