Transcript: lnc-SMAD6-2:7

Basic information

LNCipedia transcript ID: lnc-SMAD6-2:7 
LNCipedia gene ID: lnc-SMAD6-2
Location (hg19): chr15:67134907-67162499
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 19534 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000023363.1|ENCT00000142917.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 36.9121 non-coding 
CPAT coding probability 6.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMAD6-2:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SMAD6-2:7
5.0 lnc-SMAD6-2:7
5.1 lnc-SMAD6-2:7
5.2 lnc-SMAD6-2:7