Transcript: lnc-SMAD7-4:3

Basic information

LNCipedia transcript ID: lnc-SMAD7-4:3 
LNCipedia gene ID: lnc-SMAD7-4
Ensembl Gene ID: ENSG00000267762
Ensembl Transcript ID: ENST00000589818
Location (hg19): chr18:46199946-46214790
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 465 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT059196; ENST00000589818.1
Alternative gene names: ENSG00000267762.1; RP11-426J5.2; AC048380.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 37.35% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMAD7-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMAD7-4:3
4.0 lnc-SMAD7-4:3
4.1 lnc-SMAD7-4:3
5.0 lnc-SMAD7-4:3
5.1 lnc-DYM-10:3
5.2 lnc-SMAD7-4:3