Transcript: lnc-SMARCA5-4:6

Basic information

LNCipedia transcript ID: lnc-SMARCA5-4:6 
LNCipedia gene ID: lnc-SMARCA5-4
Ensembl Gene ID: ENSG00000251600
Ensembl Transcript ID: ENST00000396724
Location (hg19): chr4:144493566-144494827
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 473 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT098571; ENST00000396724.3
Alternative gene names: ENSG00000251600.6; AC139713.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.2147 non-coding 
CPAT coding probability 1.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMARCA5-4:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMARCA5-4:6
4.0 lnc-SMARCA5-4:6
4.1 lnc-SMARCA5-4:6
5.0 lnc-SMARCA5-4:6
5.1 lnc-SMAD1-14:7
5.2 lnc-SMARCA5-4:6