Transcript: lnc-SMARCC2-3:2

Basic information

LNCipedia transcript ID: lnc-SMARCC2-3:2 
LNCipedia gene ID: lnc-SMARCC2-3
Ensembl Gene ID: ENSG00000258317
Ensembl Transcript ID: ENST00000549438
Location (hg19): chr12:56514474-56522638
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 882 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000549438.1; RP11-603J24.5-002; OTTHUMT00000407630.1; NONHSAT028766
Alternative gene names: ENSG00000258317.1; RP11-603J24.5; OTTHUMG00000170142.1; AC034102.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.0602 non-coding 
CPAT coding probability 17.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMARCC2-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMARCC2-3:2
4.0 lnc-SMARCC2-3:2
4.1 lnc-SMARCC2-3:2
5.0 lnc-SMARCC2-3:2
5.1 lnc-PMEL-14:3
5.2 lnc-SMARCC2-3:2