Transcript: lnc-SMC1A-2:1

Basic information

LNCipedia transcript ID: lnc-SMC1A-2:1 
LNCipedia gene ID: lnc-SMC1A-2
Location (hg19): chrX:53388441-53393518
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 395 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00017515; NONHSAT137181
Alternative gene names: XLOC_008172; linc-IQSEC2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -162.0644 non-coding 
CPAT coding probability 3.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMC1A-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SMC1A-1:1
3.1 lnc-SMC1A-2:1
4.0 lnc-SMC1A-2:1
4.1 lnc-SMC1A-2:1
5.0 lnc-SMC1A-2:1
5.1 lnc-IQSEC2-3:1
5.2 lnc-SMC1A-2:1