Transcript: lnc-SMDT1-3:42

Basic information

LNCipedia transcript ID: lnc-SMDT1-3:42 
LNCipedia gene ID: lnc-SMDT1-3
Location (hg19): chr22:42670646-42673855
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3044 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029603; NONHSAT087042
Alternative gene names: XLOC_014255; linc-SERHL2-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.4869 non-coding 
CPAT coding probability 17.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMDT1-3:42 yes no no no

Available literature

  1. Gao (2014), Differential expression of long noncoding RNA in primary and recurrent nasopharyngeal carcinoma., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C22orf32-1:4
3.1 lnc-C22orf32-1:4
4.0 lnc-C22orf32-3:7
4.1 lnc-C22orf32-3:7
5.0 lnc-C22orf32-3:7
5.1 lnc-SMDT1-3:19
5.2 lnc-SMDT1-3:42