Transcript: lnc-SMG1-1:17

Basic information

LNCipedia transcript ID: lnc-SMG1-1:17 
LNCipedia gene ID: lnc-SMG1-1
Location (hg19): chr16:18809034-18812866
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 581 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT140853
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 820.4568 coding 
CPAT coding probability 19.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMG1-1:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-1035H13.3.1-1:3
4.0 lnc-RP11-1035H13.3.1-1:3
4.1 lnc-RP11-1035H13.3.1-1:3
5.0 lnc-RP11-1035H13.3.1-1:3
5.1 lnc-MARF1-42:3
5.2 lnc-SMG1-1:17