Transcript: lnc-SMG1-5:6

Basic information

LNCipedia transcript ID: lnc-SMG1-5:6 
LNCipedia gene ID: lnc-SMG1-5
Location (hg19): chr16:19078428-19079152
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 725 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000261465.2|FTMT26200001295.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -248.41 non-coding 
CPAT coding probability 0.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMG1-5:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SMG1-1:12
5.0 lnc-SMG1-1:12
5.1 lnc-MARF1-49:6
5.2 lnc-SMG1-5:6