Transcript: lnc-SMIM10L2B-1:7

Basic information

LNCipedia transcript ID: lnc-SMIM10L2B-1:7 
LNCipedia gene ID: lnc-SMIM10L2B-1
Location (hg19): chrX:134229058-134232664
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2696 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000433425.2; LINC00087-002; OTTHUMT00000058396.2
Alternative gene names: ENSG00000196972.6; LINC00087; OTTHUMG00000022468.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 407.234 coding 
CPAT coding probability 16.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMIM10L2B-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM127B-1:1
4.0 lnc-FAM127B-1:1
4.1 lnc-FAM127B-1:1
5.0 lnc-FAM127B-1:1
5.1 lnc-ETDB-4:7
5.2 lnc-SMIM10L2B-1:7