Transcript: lnc-SMIM11B-179:1

Basic information

LNCipedia transcript ID: lnc-SMIM11B-179:1 
LNCipedia gene ID: lnc-SMIM11B-179
Ensembl Gene ID: ENSG00000278996
Ensembl Transcript ID: ENST00000623664
Location (hg19): :-
Strand:
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2498 bp
Exons: 0
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000623664.1
Alternative gene names: ENSG00000278996.1; CH507-513H4.1; FP671120.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 50.1033 non-coding 
CPAT coding probability 7.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMIM11B-179:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-OLIG1-179:1
5.1 lnc-OLIG1-179:1
5.2 lnc-SMIM11B-179:1