Transcript: lnc-SMIM14-1:1

Basic information

LNCipedia transcript ID: lnc-SMIM14-1:1 
LNCipedia gene ID: lnc-SMIM14-1
Location (hg19): chr4:39540664-39545555
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 844 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00009040; NONHSAT096091
Alternative gene names: XLOC_003932; linc-UGDH


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.4338 non-coding 
CPAT coding probability 3.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMIM14-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C4orf34-1:1
3.1 lnc-C4orf34-1:1
4.0 lnc-C4orf34-1:1
4.1 lnc-C4orf34-1:1
5.0 lnc-C4orf34-1:1
5.1 lnc-GABRA4-45:1
5.2 lnc-SMIM14-1:1