Transcript: lnc-SMIM15-4:3

Basic information

LNCipedia transcript ID: lnc-SMIM15-4:3 
LNCipedia gene ID: lnc-SMIM15-4
RefSeq ID: NR_109910
Location (hg19): chr5:60958984-60994259
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1669 bp
Exons: 8
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109910.1
Alternative gene names: LOC101928651


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -61.8155 non-coding 
CPAT coding probability 7.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMIM15-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-PLK2-15:3
5.1 lnc-PLK2-15:3
5.2 lnc-SMIM15-4:3