Transcript: lnc-SMIM17-2:2

Basic information

LNCipedia transcript ID: lnc-SMIM17-2:2 
LNCipedia gene ID: lnc-SMIM17-2
Location (hg19): chr19:57218193-57271915
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 446 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: NONHSAT068187; ENST00000600093.1; ENST00000600093.5
Alternative gene names: ENSG00000269793.1; AC006115.3; ENSG00000269793.5; ZIM2-AS1; ZIM2as


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.0317 non-coding 
CPAT coding probability 3.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMIM17-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF71-6:2
4.0 ZIM2-AS1:2
4.1 ZIM2-AS1:2
5.0 ZIM2-AS1:2
5.1 lnc-ZNF583-22:2
5.2 lnc-SMIM17-2:2