Transcript: lnc-SMIM20-7:2

Basic information

LNCipedia transcript ID: lnc-SMIM20-7:2 
LNCipedia gene ID: lnc-SMIM20-7
Location (hg19): chr4:26030537-26034812
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2734 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000068125.1|ENCT00000317840.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -108.1655 non-coding 
CPAT coding probability 3.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMIM20-7:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C4orf52-7:2
5.0 lnc-C4orf52-7:2
5.1 lnc-USP17L28-111:2
5.2 lnc-SMIM20-7:2