Transcript: lnc-SMIM23-1:2

Basic information

LNCipedia transcript ID: lnc-SMIM23-1:2 
LNCipedia gene ID: lnc-SMIM23-1
Location (hg19): chr5:171165001-171170284
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1170 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010829; NONHSAT105091
Alternative gene names: XLOC_004629; linc-EFCAB9-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.0542 non-coding 
CPAT coding probability 3.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMIM23-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTB-78H18.1.1-1:2
3.1 lnc-CTB-78H18.1.1-1:1
4.0 lnc-CTB-78H18.1.1-1:1
4.1 lnc-CTB-78H18.1.1-1:1
5.0 lnc-CTB-78H18.1.1-1:1
5.1 lnc-ATP6V0E1-44:2
5.2 lnc-SMIM23-1:2