Transcript: lnc-SMIM32-4:2

Basic information

LNCipedia transcript ID: lnc-SMIM32-4:2 
LNCipedia gene ID: lnc-SMIM32-4
Location (hg19): chr5:135519495-135528838
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3155 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000271824.1|MICT00000289500.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 735.7949 coding 
CPAT coding probability 94.24% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMIM32-4:2 no no no no

Available literature

  1. Yu (2012), LncRNAs expression signatures of renal clear cell carcinoma revealed by microarray., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TRPC7-4:5
5.0 lnc-TRPC7-4:5
5.1 lnc-TIFAB-21:2
5.2 lnc-SMIM32-4:2