Transcript: lnc-SMIM33-1:1

Basic information

LNCipedia transcript ID: lnc-SMIM33-1:1 
LNCipedia gene ID: lnc-SMIM33-1
Location (hg19): chr5:138924828-138925221
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 394 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr5_8419_+
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.7032 non-coding 
CPAT coding probability 1.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMIM33-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CXXC5-3:1
4.0 lnc-CXXC5-3:1
4.1 lnc-CXXC5-3:1
5.0 lnc-CXXC5-3:1
5.1 lnc-EIF4EBP3-28:1
5.2 lnc-SMIM33-1:1