Transcript: lnc-SMIM36-1:1

Basic information

LNCipedia transcript ID: lnc-SMIM36-1:1 
LNCipedia gene ID: lnc-SMIM36-1
Location (hg19): chr17:53657960-53667280
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 621 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025698; NONHSAT054818
Alternative gene names: XLOC_012526; linc-MMD-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.3256 non-coding 
CPAT coding probability 2.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMIM36-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM100-1:1
3.1 lnc-TMEM100-1:1
4.0 lnc-TMEM100-1:1
4.1 lnc-TMEM100-1:1
5.0 lnc-TMEM100-1:1
5.1 lnc-PTRH2-63:1
5.2 lnc-SMIM36-1:1