Transcript: lnc-SMIM37-1:1

Basic information

LNCipedia transcript ID: lnc-SMIM37-1:1 
LNCipedia gene ID: lnc-SMIM37-1
Location (hg19): chr2:110969106-111002997
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2051 bp
Exons: 9
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000414416; ENST00000414416.2; LINC00116-001; OTTHUMT00000253918.3
Alternative gene names: ENSG00000175701; NCRNA00116; ENSG00000175701.6; LINC00116; OTTHUMG00000131194.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 562.7176 coding 
CPAT coding probability 79.01% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMIM37-1:1 no no no no

Available literature

  1. Crappé (2013), Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs., BMC Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NPHP1-1:1
3.1 lnc-NPHP1-1:1
4.0 lnc-NPHP1-1:1
4.1 lnc-NPHP1-1:1
5.0 lnc-NPHP1-1:1
5.1 lnc-EN1-92:1
5.2 lnc-SMIM37-1:1