Transcript: lnc-SMIM37-1:3

Basic information

LNCipedia transcript ID: lnc-SMIM37-1:3 
LNCipedia gene ID: lnc-SMIM37-1
RefSeq ID: NR_027063
Location (hg19): chr2:110969106-110980517
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1619 bp
Exons: 8
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00002669; NR_027063; NR_027063.1
Alternative gene names: XLOC_002263; linc-NPHP1-3; LINC00116


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 562.7176 coding 
CPAT coding probability 79.40% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMIM37-1:3 no no no no

Available literature

  1. Crappé (2013), Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs., BMC Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NPHP1-1:3
3.1 lnc-NPHP1-1:3
4.0 lnc-NPHP1-1:3
4.1 lnc-NPHP1-1:3
5.0 lnc-NPHP1-1:3
5.1 lnc-EN1-92:3
5.2 lnc-SMIM37-1:3