Transcript: lnc-SMN2-4:7

Basic information

LNCipedia transcript ID: lnc-SMN2-4:7 
LNCipedia gene ID: lnc-SMN2-4
Ensembl Gene ID: ENSG00000269983
Ensembl Transcript ID: ENST00000602697
Location (hg19): chr5:69745463-69746180
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 718 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT101976; ENST00000602697.1
Alternative gene names: ENSG00000269983.1; RP11-497H16.9; AC146944.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.9661 non-coding 
CPAT coding probability 0.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMN2-4:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMN2-2:7
4.0 lnc-SMN2-4:7
4.1 lnc-SMN2-4:7
5.0 lnc-SMN2-4:7
5.1 lnc-BDP1-15:7
5.2 lnc-SMN2-4:7