Transcript: lnc-SMNDC1-3:1

Basic information

LNCipedia transcript ID: lnc-SMNDC1-3:1 
LNCipedia gene ID: lnc-SMNDC1-3
Location (hg19): chr10:112257757-112258300
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 469 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000456985.1; RP11-525A16.4-001; OTTHUMT00000050332.1; NONHSAT016346
Alternative gene names: ENSG00000225461.1; RP11-525A16.4; OTTHUMG00000019039.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 45.83% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMNDC1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMNDC1-3:1
4.0 lnc-SMNDC1-3:1
4.1 lnc-SMNDC1-3:1
5.0 lnc-SMNDC1-3:1
5.1 lnc-BBIP1-3:1
5.2 lnc-SMNDC1-3:1