Transcript: lnc-SMOC2-4:1

Basic information

LNCipedia transcript ID: lnc-SMOC2-4:1 
LNCipedia gene ID: lnc-SMOC2-4
Ensembl Gene ID: ENSG00000234647
Ensembl Transcript ID: ENST00000446811
Location (hg19): chr6:168643618-168663261
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2246 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011418; ENST00000446811; ENST00000446811.1; RP11-503C24.4-001; OTTHUMT00000043190.1; NONHSAT116146
Alternative gene names: XLOC_005545; linc-SMOC2-2; ENSG00000234647; RP11-503C24.4; ENSG00000234647.1; OTTHUMG00000016043.1; ENSG00000234647.2; AL606970.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.9564 non-coding 
CPAT coding probability 3.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMOC2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SMOC2-3:1
3.1 lnc-SMOC2-4:1
4.0 lnc-SMOC2-4:1
4.1 lnc-SMOC2-4:1
5.0 lnc-SMOC2-4:1
5.1 lnc-SYTL3-102:1
5.2 lnc-SMOC2-4:1