Transcript: lnc-SMOC2-4:2

Basic information

LNCipedia transcript ID: lnc-SMOC2-4:2 
LNCipedia gene ID: lnc-SMOC2-4
RefSeq ID: NR_110870
Location (hg19): chr6:168643618-168663258
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2243 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110870; NR_110870.1
Alternative gene names: LOC101929420


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 29.9564 non-coding 
CPAT coding probability 3.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMOC2-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMOC2-4:2
4.0 lnc-SMOC2-4:2
4.1 lnc-SMOC2-4:2
5.0 lnc-SMOC2-4:2
5.1 lnc-SYTL3-102:2
5.2 lnc-SMOC2-4:2