Transcript: lnc-SMOC2-8:1

Basic information

LNCipedia transcript ID: lnc-SMOC2-8:1 
LNCipedia gene ID: lnc-SMOC2-8
Location (hg19): chr6:169563323-169596780
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 239 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012024; NONHSAT116185
Alternative gene names: XLOC_005552; linc-C6orf120-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.2997 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMOC2-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SMOC2-7:1
3.1 lnc-SMOC2-8:1
4.0 lnc-SMOC2-8:1
4.1 lnc-SMOC2-8:1
5.0 lnc-SMOC2-8:1
5.1 lnc-SYTL3-114:11
5.2 lnc-SMOC2-8:1