Transcript: lnc-SMOC2-8:11

Basic information

LNCipedia transcript ID: lnc-SMOC2-8:11 
LNCipedia gene ID: lnc-SMOC2-8
Location (hg19): chr6:169563222-169580428
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5112 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000226445.1|MICT00000315971.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.2088 non-coding 
CPAT coding probability 42.04% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMOC2-8:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SMOC2-8:11
5.0 lnc-SMOC2-8:11
5.1 lnc-SYTL3-114:7
5.2 lnc-SMOC2-8:11