Transcript: lnc-SMPD1-3:2

Basic information

LNCipedia transcript ID: lnc-SMPD1-3:2 
LNCipedia gene ID: lnc-SMPD1-3
Location (hg19): chr11:6354842-6365869
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 459 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT017708
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -159.2801 non-coding 
CPAT coding probability 4.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMPD1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMPD1-3:2
4.0 lnc-SMPD1-3:2
4.1 lnc-SMPD1-3:2
5.0 lnc-SMPD1-3:2
5.1 lnc-OR51M1-12:3
5.2 lnc-SMPD1-3:2