Transcript: lnc-SMPD2-1:1

Basic information

LNCipedia transcript ID: lnc-SMPD2-1:1 
LNCipedia gene ID: lnc-SMPD2-1
Ensembl Gene ID: ENSG00000260273
Ensembl Transcript ID: ENST00000563105
Location (hg19): chr6:109703998-109704869
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 872 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563105.1; RP11-425D10.10-001; OTTHUMT00000431291.1; NONHSAT114397
Alternative gene names: ENSG00000260273.1; RP11-425D10.10; OTTHUMG00000175937.1; AL359711.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.7068 non-coding 
CPAT coding probability 1.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMPD2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMPD2-1:1
4.0 lnc-SMPD2-1:1
4.1 lnc-SMPD2-1:1
5.0 lnc-SMPD2-1:1
5.1 lnc-SMPD2-1:1
5.2 lnc-SMPD2-1:1