Transcript: lnc-SMPD3-2:6

Basic information

LNCipedia transcript ID: lnc-SMPD3-2:6 
LNCipedia gene ID: lnc-SMPD3-2
Location (hg19): chr16:68678953-68680086
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 738 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000260577.1|MICT00000135184.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -420.9646 non-coding 
CPAT coding probability 85.34% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMPD3-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SMPD3-2:6
5.0 lnc-SMPD3-2:6
5.1 lnc-SLC12A4-13:1
5.2 lnc-SMPD3-2:6