Transcript: lnc-SMPDL3A-3:2

Basic information

LNCipedia transcript ID: lnc-SMPDL3A-3:2 
LNCipedia gene ID: lnc-SMPDL3A-3
Location (hg19): chr6:123391444-123394062
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2619 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000426074; ENST00000426074.1; RP11-160A10.2-001; OTTHUMT00000042044.1
Alternative gene names: ENSG00000225504; RP11-160A10.2; ENSG00000225504.2; OTTHUMG00000015493.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.541 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMPDL3A-3:2 yes no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.
  2. Luo (2014), Gene microarray analysis of the lncRNA expression profile in human urothelial carcinoma of the bladder., Int J Clin Exp Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLVS2-1:1
3.1 lnc-CLVS2-1:1
4.0 lnc-CLVS2-1:1
4.1 lnc-CLVS2-1:1
5.0 lnc-CLVS2-1:1
5.1 lnc-TPD52L1-16:2
5.2 lnc-SMPDL3A-3:2