Transcript: lnc-SMYD3-6:3

Basic information

LNCipedia transcript ID: lnc-SMYD3-6:3 
LNCipedia gene ID: lnc-SMYD3-6
Location (hg19): chr1:245912669-245977713
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 368 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT010694
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 429.7494 coding 
CPAT coding probability 1.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMYD3-6:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TFB2M-6:2
4.0 lnc-TFB2M-6:2
4.1 lnc-TFB2M-6:2
5.0 lnc-TFB2M-6:2
5.1 lnc-LYPD8-34:2
5.2 lnc-SMYD3-6:3