Transcript: lnc-SNAP91-1:1

Basic information

LNCipedia transcript ID: lnc-SNAP91-1:1 
LNCipedia gene ID: lnc-SNAP91-1
Location (hg19): chr6:84437774-84446244
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 351 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011525; ENST00000443471; ENST00000443471.1; RP3-393K13.1-001; OTTHUMT00000041359.1; NONHSAT113790
Alternative gene names: XLOC_005776; linc-SNAP91; ENSG00000237874; RP3-393K13.1; ENSG00000237874.1; OTTHUMG00000015116.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1023.8864 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNAP91-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SNAP91-1:1
3.1 lnc-SNAP91-1:1
4.0 lnc-SNAP91-1:1
4.1 lnc-SNAP91-1:1
5.0 lnc-SNAP91-1:1
5.1 lnc-CEP162-5:1
5.2 lnc-SNAP91-1:1