Transcript: lnc-SNAPC3-11:2

Basic information

LNCipedia transcript ID: lnc-SNAPC3-11:2 
LNCipedia gene ID: lnc-SNAPC3-11
Location (hg19): chr9:14315582-14358565
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2025 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000225472.1|MICT00000355923.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 2.6771 non-coding 
CPAT coding probability 3.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNAPC3-11:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C9orf146-2:10
5.0 lnc-C9orf146-2:10
5.1 lnc-RECK-201:6
5.2 lnc-SNAPC3-11:2