Transcript: lnc-SNF8-1:1

Basic information

LNCipedia transcript ID: lnc-SNF8-1:1 
LNCipedia gene ID: lnc-SNF8-1
RefSeq ID: NR_135674
Location (hg19): chr17:46952222-46986345
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 738 bp
Exons: 4
Sources: NONCODE v4; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT054487; NR_135674.1
Alternative gene names: LOC105371814


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 77.2929 coding 
CPAT coding probability 2.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SNF8-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNF8-1:1
4.0 lnc-SNF8-1:1
4.1 lnc-SNF8-1:1
5.0 lnc-SNF8-1:1
5.1 lnc-ZNF652-19:1
5.2 lnc-SNF8-1:1