Transcript: lnc-SNRNP40-3:2

Basic information

LNCipedia transcript ID: lnc-SNRNP40-3:2 
LNCipedia gene ID: lnc-SNRNP40-3
Location (hg19): chr1:31765691-31769629
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 677 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT002095
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1294.8083 coding 
CPAT coding probability 51.10% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SNRNP40-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NKAIN1-3:1
4.0 lnc-NKAIN1-3:1
4.1 lnc-NKAIN1-3:1
5.0 lnc-NKAIN1-3:1
5.1 lnc-SNRNP40-3:1
5.2 lnc-SNRNP40-3:2