Transcript: lnc-SNX16-1:4

Basic information

LNCipedia transcript ID: lnc-SNX16-1:4 
LNCipedia gene ID: lnc-SNX16-1
Location (hg19): chr8:83020804-83064177
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 330 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00015056; NONHSAT127484
Alternative gene names: XLOC_007136; linc-SNX16-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.6979 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX16-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SNX16-1:4
3.1 lnc-SNX16-1:4
4.0 lnc-SNX16-1:4
4.1 lnc-SNX16-1:4
5.0 lnc-SNX16-1:4
5.1 lnc-CPA6-165:4
5.2 lnc-SNX16-1:4