Transcript: lnc-SOCS5-4:11

Basic information

LNCipedia transcript ID: lnc-SOCS5-4:11 
LNCipedia gene ID: lnc-SOCS5-4
RefSeq ID: NR_024452
Location (hg19): chr2:47055003-47086145
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1210 bp
Exons: 3
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00002647; NR_024452; NR_024452.1
Alternative gene names: XLOC_001458; linc-TTC7A-2; LINC01119


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.4378 non-coding 
CPAT coding probability 8.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOCS5-4:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC016722.1.1-1:3
3.1 lnc-AC016722.1.1-1:3
4.0 lnc-AC016722.2.1-1:12
4.1 lnc-AC016722.2.1-1:12
5.0 lnc-AC016722.2.1-1:12
5.1 lnc-TTC7A-3:11
5.2 lnc-SOCS5-4:11