Transcript: lnc-SOCS5-4:13

Basic information

LNCipedia transcript ID: lnc-SOCS5-4:13 
HGNC Gene Symbol: lnc-SOCS5-4    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1119
Ensembl Gene ID: ENSG00000239332
Ensembl Transcript ID: ENST00000468141
Location (hg19): chr2:47073015-47086145
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2157 bp
Exons: 3
Sources: Broad Institute; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002699; NONHSAT070530; ENST00000468141.2
Alternative gene names: XLOC_001458; linc-TTC7A-2; ENSG00000239332.5; LINC01119


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.7096 non-coding 
CPAT coding probability 7.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOCS5-4:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC016722.1.1-1:4
3.1 lnc-AC016722.1.1-1:4
4.0 lnc-AC016722.2.1-1:14
4.1 lnc-AC016722.2.1-1:14
5.0 lnc-AC016722.2.1-1:14
5.1 lnc-TTC7A-3:13
5.2 lnc-SOCS5-4:13