Transcript: lnc-SOCS5-4:2

Basic information

LNCipedia transcript ID: lnc-SOCS5-4:2 
LNCipedia gene ID: lnc-SOCS5-4
Location (hg19): chr2:47038722-47086117
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 991 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00003666; NONHSAT070527
Alternative gene names: XLOC_001458; linc-TTC7A-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.4378 non-coding 
CPAT coding probability 7.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOCS5-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC016722.1.1-1:2
3.1 lnc-AC016722.1.1-1:2
4.0 lnc-AC016722.2.1-1:3
4.1 lnc-AC016722.2.1-1:3
5.0 lnc-AC016722.2.1-1:3
5.1 lnc-TTC7A-3:2
5.2 lnc-SOCS5-4:2