Transcript: lnc-SOCS5-4:3

Basic information

LNCipedia transcript ID: lnc-SOCS5-4:3 
LNCipedia gene ID: lnc-SOCS5-4
Location (hg19): chr2:47043807-47049798
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1042 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00002646
Alternative gene names: XLOC_001459; linc-TTC7A-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.3157 non-coding 
CPAT coding probability 48.79% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SOCS5-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOCS5-1:1
3.1 lnc-SOCS5-2:1
4.0 lnc-AC016722.2.1-1:4
4.1 lnc-AC016722.2.1-1:4
5.0 lnc-AC016722.2.1-1:4
5.1 lnc-TTC7A-3:3
5.2 lnc-SOCS5-4:3