Transcript: lnc-SOCS5-4:6

Basic information

LNCipedia transcript ID: lnc-SOCS5-4:6 
HGNC Gene Symbol: lnc-SOCS5-4    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1118
Ensembl Gene ID: ENSG00000222005
Ensembl Transcript ID: ENST00000409912
Location (hg19): chr2:47043822-47049794
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1023 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000409912.5
Alternative gene names: ENSG00000222005.8; LINC01118


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -85.3157 non-coding 
CPAT coding probability 48.81% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SOCS5-4:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC016722.2.1-1:7
4.1 lnc-AC016722.2.1-1:7
5.0 lnc-AC016722.2.1-1:7
5.1 lnc-TTC7A-3:6
5.2 lnc-SOCS5-4:6