Transcript: lnc-SOD2-1:1

Basic information

LNCipedia transcript ID: lnc-SOD2-1:1 
LNCipedia gene ID: lnc-SOD2-1
Location (hg19): chr6:160060339-160061133
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 741 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011605; ENST00000427974; ENST00000427974.1; RP1-56L9.7-001; OTTHUMT00000042920.1; NONHSAT115853
Alternative gene names: XLOC_005901; linc-TAGAP-2; ENSG00000224073; RP1-56L9.7; ENSG00000224073.1; OTTHUMG00000015939.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.7099 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOD2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOD2-1:1
3.1 lnc-SOD2-1:1
4.0 lnc-SOD2-1:1
4.1 lnc-SOD2-1:1
5.0 lnc-SOD2-1:1
5.1 lnc-TAGAP-10:1
5.2 lnc-SOD2-1:1