Transcript: lnc-SOD3-15:2

Basic information

LNCipedia transcript ID: lnc-SOD3-15:2 
LNCipedia gene ID: lnc-SOD3-15
Ensembl Gene ID: ENSG00000249453
Ensembl Transcript ID: ENST00000506514
Location (hg19): chr4:23781213-23784183
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 442 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007493; ENST00000506514.1; RP13-497K6.1-001; OTTHUMT00000360001.1; NONHSAT095785
Alternative gene names: XLOC_003474; linc-SOD3-2; ENSG00000249453.1; RP13-497K6.1; OTTHUMG00000160277.1; AC092834.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -213.3183 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOD3-15:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOD3-2:2
3.1 lnc-SOD3-3:2
4.0 lnc-SOD3-3:2
4.1 lnc-SOD3-3:2
5.0 lnc-SOD3-3:2
5.1 lnc-USP17L28-91:2
5.2 lnc-SOD3-15:2