Transcript: lnc-SOD3-4:2

Basic information

LNCipedia transcript ID: lnc-SOD3-4:2 
LNCipedia gene ID: lnc-SOD3-4
Ensembl Gene ID: ENSG00000250137
Ensembl Transcript ID: ENST00000499715
Location (hg19): chr4:23764550-23770248
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 559 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007492; ENST00000499715.2; RP11-380P13.1-002; OTTHUMT00000360003.1; NONHSAT095783
Alternative gene names: XLOC_003473; linc-SOD3-3; ENSG00000250137.1; RP11-380P13.1; OTTHUMG00000160278.1; AC093607.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.4199 non-coding 
CPAT coding probability 3.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOD3-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOD3-3:2
3.1 lnc-SOD3-4:2
4.0 lnc-SOD3-4:2
4.1 lnc-SOD3-4:2
5.0 lnc-SOD3-4:2
5.1 lnc-USP17L28-90:2
5.2 lnc-SOD3-4:2