Transcript: lnc-SOD3-6:3

Basic information

LNCipedia transcript ID: lnc-SOD3-6:3 
LNCipedia gene ID: lnc-SOD3-6
Ensembl Gene ID: ENSG00000248837
Ensembl Transcript ID: ENST00000506425
Location (hg19): chr4:23004776-23043141
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 957 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506425; ENST00000506425.1; RP11-412P11.1-003; OTTHUMT00000359923.1; NONHSAT095772
Alternative gene names: ENSG00000248837; RP11-412P11.1; ENSG00000248837.1; OTTHUMG00000160256.1; ENSG00000248837.5; AC097512.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.0965 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOD3-6:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOD3-5:3
3.1 lnc-SOD3-6:3
4.0 lnc-SOD3-6:3
4.1 lnc-SOD3-6:3
5.0 lnc-SOD3-6:3
5.1 lnc-USP17L28-88:4
5.2 lnc-SOD3-6:3