Transcript: lnc-SORBS3-1:2

Basic information

LNCipedia transcript ID: lnc-SORBS3-1:2 
LNCipedia gene ID: lnc-SORBS3-1
Location (hg19): chr8:22402216-22408678
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1199 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00015250; NONHSAT125480
Alternative gene names: XLOC_006738; linc-SORBS3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.6868 non-coding 
CPAT coding probability 3.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SORBS3-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPP3CC-1:1
3.1 lnc-PPP3CC-1:1
4.0 lnc-SORBS3-1:2
4.1 lnc-SORBS3-1:2
5.0 lnc-SORBS3-1:2
5.1 lnc-RHOBTB2-28:1
5.2 lnc-SORBS3-1:2