Transcript: lnc-SORCS3-7:1

Basic information

LNCipedia transcript ID: lnc-SORCS3-7:1 
LNCipedia gene ID: lnc-SORCS3-7
Location (hg19): chr10:109136308-109160994
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 528 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000429110; ENST00000429110.1; RP11-432B10.1-001; OTTHUMT00000050239.1; NONHSAT016284
Alternative gene names: ENSG00000230151; RP11-432B10.1; ENSG00000230151.1; OTTHUMG00000019019.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.1693 non-coding 
CPAT coding probability 4.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SORCS3-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SORCS3-7:1
3.1 lnc-SORCS3-7:1
4.0 lnc-SORCS3-7:1
4.1 lnc-SORCS3-7:1
5.0 lnc-SORCS3-7:1
5.1 lnc-SMC3-44:1
5.2 lnc-SORCS3-7:1