Transcript: lnc-SOS1-1:3

Basic information

LNCipedia transcript ID: lnc-SOS1-1:3 
LNCipedia gene ID: lnc-SOS1-1
RefSeq ID: NR_028386
Location (hg19): chr2:39186428-39187485
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1058 bp
Exons: 1
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_028386.1
Alternative gene names: LOC375196


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 208.7283 coding 
CPAT coding probability 1.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SOS1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-MAP4K3-10:2
5.1 lnc-MAP4K3-10:2
5.2 lnc-SOS1-1:3